As others have said, there are no specific guides. There are other documents, discussion threads, and presentations discussing this, however.
ThinApp Troubleshooting - http://blogs.vmware.com/thinapp/2009/05/app-troubleshooting.html
ThinApp Troubleshooting-Repost - http://blogs.vmware.com/thinapp/2010/01/thinapp-troubleshooting-repost.html
ThinApp Bootcamp - http://communities.vmware.com/community/vmtn/desktop/thinapp/bootcamp
See the Performance Enhancing, Design Best Practices, and Implementation Best Practices sessions.